Scaffold Ga0063391_1000507

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1000507
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95285
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (72.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011767	Metagenome / Metatranscriptome	287	Y
F025308	Metagenome	202	N
F041247	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100050720	F041247	AGGAG	MTNFYSIQADKLKFDRDMLVDFYKTVDQTKWIHRQDKLPQYWPIDENNSFDRNHEFYKLLVENINVDVDENRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEKNDDWSKTPVIFIDQFDQTVERVEHTNNTPLLYSANYMHGTIKSLDNHNDRITFVVDLKFWFERVRIKYNEGTLFTNNKAFSWSDTTFVMDEDPLVN*
Ga0063391_100050760	F025308	GGA	MISDGDFKFLLDKSQGSTKILEIGTGTGKSTAALRLNAEVYTIDKNDMFDYNVDCYRFITESKVYWQSYTHYDFDFVFIDGSITKLDCEQILKRTKDSFKIVFHDYLPNEDKDPGKNKGYYNMKVFKETALLSYAMVEELGGTHCAIIALKKDK*
Ga0063391_100050771	F011767	GGAG	MEAIIQRIGKFHSKVFGTLARKAKTSKFWAILLTLAVLYEIVEHIVWPILVPYLIYMQWFNNG*