Scaffold Ga0063391_1000446

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1000446
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15754
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027866	Metagenome / Metatranscriptome	193	Y
F037683	Metagenome	167	Y
F050421	Metagenome	145	Y
F066839	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100044612	F050421	N/A	MIIENRQVKVGDEVRVGMQLMTVDEVTEFDTVIVIDQDGEELELTENEIDIY*
Ga0063391_100044624	F037683	N/A	MEHDEVMISRIKLDVKEWMNTYGEIMMGSEISDDVCNIIDDSVERTKRIRKGWELPDRC*
Ga0063391_100044626	F066839	N/A	MTEKQCKKFWQDYPEEASSGHKWTDPEILDAVWEQWNNGSGKECALFKKLEVRSMMIGDYVSILRPTVASVWHECLPIGWRINVPWDEVLGNVERKDFSDVSKDDVRKALINKLEQDRWWERMIKNNDILLEDHWVTYENN*
Ga0063391_100044627	F027866	N/A	MKQYKTYQAKNAVKAAQVTNHIKAQKKLGVGHSVAKAEAYRIYNIKAAKPILLRYFVKVGL*