Scaffold Ga0063391_1000135

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1000135
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38971
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (78.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003092	Metagenome / Metatranscriptome	508	Y
F007138	Metagenome	357	Y
F017910	Metagenome / Metatranscriptome	238	Y
F077400	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100013514	F017910	N/A	MSVITKLEDGGEVDDTFVTSIDSIMILKSLMGDDKVFDENLNMTEYGNKKLKKLQKKWCRENQHKNYNNKDYAK*
Ga0063391_100013547	F003092	AGGAG	MFKKLLVIIPLLFALGCEDNISHEPESTMKLWLDGEVVDVEANYEKITTYGEEVEYFNTEDSTTYTKKILVIHFQKEGGRVELNKEHYAVVFTDWEGDTSNGKPIDVGEYQWPAQCPVCARKCIHGASSKWVRMEIIGDSDVAVGGQAHIDEISKSGDSWIISGEGEGTFFNPYIDANMNGKIQFSNLKIDTDSEESPYHNYGGR*
Ga0063391_10001356	F077400	AGTAGG	MSGFGNPNLSNYIYPVQTSEQRNQDPQEDPRVQVSEMLKGPVREEGESYEDYKIRMKVEYKLTRDYLKGYLLPQGDK*
Ga0063391_10001359	F007138	AGG	MFDKTIKLTGEYPSDFKPSVSVQEVQQYFDAYKFYDGRMLGGSKIDYRTQYPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLVLREIAQNLNTDLYVLWESDGRFGLEMKPLNELFDKAVWNTSEDNPTKEWYKKKMESK*