Scaffold Ga0063391_1000115

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1000115
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26978
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007774	Metagenome / Metatranscriptome	345	Y
F047318	Metagenome	150	Y
F059066	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_100011514	F059066	GAGG	MKKTITTIGVSDITEEHYNHYFHKWLYTYGGASDVKTISEFIYEYDSDVYGDIDKYDTGLCPCVMCMEESL*
Ga0063391_100011516	F047318	AGTAG	MERERKIMKKKTKTKTTPIVYSEAALKYFQEMNDNDEFMTEPVNGDYVDYLLGDVGYNAHEGTTMDTEWDELSDDSDWFMD*
Ga0063391_100011534	F007774	N/A	MSKKDKLTPEQEKELIMLAAEIEAEAIAMKMDYDKNPSRESGSVVYVNEQSTLLDSEDEELGHQALVSSSQILAKEVKKQKKKNGDKK*