Scaffold Ga0063391_1000001

Overview

Basic Information

• Taxon OID: 3300003937
• Scaffold ID: Ga0063391_1000001
• Source Dataset Name: SPOT_150m_metagenome_year
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Davis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 124439
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 120 (71.01%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The San Pedro Channel, Pacific Ocean In The San Pedro Ocean Time-Series (Spot) Study

Source Dataset Sampling Location

• Location Name: San Pedro Channel, Pacific
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.42
  • Depth (m): 890

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006294	Metagenome / Metatranscriptome	377	Y
F019562	Metagenome / Metatranscriptome	229	N
F023949	Metagenome / Metatranscriptome	208	Y
F053345	Metagenome	141	Y
F061913	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063391_1000001144	F006294	AGG	MSDDGQLEFDFGLESKIPDNVILFPKIPLRRPNWAQQKLDAKKQDMLRRQHNQVYVQAITEQLTEQMLLRLREENINITTKEFLSDYKLSLEALKSMLLRAVHMKHPLQQRVDRAVKCKQGEGKDVYAITIDYNKF*
Ga0063391_100000125	F023949	AGGAG	MTKDDTKKFVNSLEKGDNKQAGTDIKNALADKVSGALDDAKVDVAKSVFTGQQGVETPEANPFTGNDTAAEAPAPEVPSDEVAK*
Ga0063391_100000152	F061913	GGA	MLIEQGKFYVKCHNIYYNQQWLVDVLDSLSPKDWVDGVSTTGVAWTVSECRTIPYEGMWKDIVENINLDTVGSSERGLEDKKPWCFFSKLPPGGINLHYDHRRWGAILFPVRGKFELTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPIDDEEERVVFSVNIHSHPTEMYKKAIDGTWLNKNTENIGVSND*
Ga0063391_100000154	F019562	AGG	MWYHRKFKLRYDANVFNDIIEYAKTAEWKQGYDQNGLIWNIEELPLKPEQFPILNELYEGLNAEFKRPSFFLSNVKPGGLVNHIDHNKWGNLGIPILGDFKNTPQYFYDQFNHPVESFINDSPVIFNTRMLHAVPRELDDTGPRWILMMDLFDWVDKLFAKVDNKTIWTDTKNFNA*
Ga0063391_100000187	F053345	N/A	MITTDQMIAQALANMQRLNDQIELNLNILSNLDRMHSESHGGSMNLHDQVSHIQNGYDTLNNGLRSARGVHGYDEIVNQDPARIS*