Scaffold JGI25405J52794_10005474

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25405J52794_10005474

Scaffold JGI25405J52794_10005474

Overview

Basic Information
Taxon OID	3300003911 Open in IMG/M
Scaffold ID	JGI25405J52794_10005474 Open in IMG/M
Source Dataset Name	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2291
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location Name	University of Puerto Rico, San Juan, Puerto Rico
Coordinates	Lat. (^o)	18.402889	Long. (^o)	-66.050054	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054690	Metagenome	139	Y
F072996	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25405J52794_100054741	F054690	N/A	VGLQITVSWDLSAQLTTSVTSDRLFTGDNEEDPMKTKSLLLTIVIGAGFACGAAAQVREQPGEMVQMKSLPASVQQTINQQAAGGEVVRVKREDDANGKWNYEVVVRSQGKERAFEVDPNGKLLKTHGQKK*
JGI25405J52794_100054742	F072996	N/A	VKRRPERFWNSSQTRTNDLEIAVPALALHSFSQAIEIPTSLRDQPLDEWQTSARLTALLSRSGIRVLGXLHGRKVVDFVWEKNCGPKTLYELDLLARRARFRNGKTSCNGHRRGHAHPSHDVAATGGERAAAGMQEDGASFAIPESICHLSFNELPITRRLANVVRTMGARRLGDLNGRGCFELLQYKQCGWSTISEIQQLIERAVSGEFDITQIEEVNAPAELSSLLEQALAKLPLRERQFVLARIGAQPGNSRSPGADLLCPSYAEIGRRYGLTRARVHKVFVNTLDSLRKTWGPRIPRLLEVIKWRCLSTISPLTPQLLERWINSAEVSARRVMTRDNFSGCCRLSAQARVRLIAALDKNIPCWPETHHNRRWIDGSVDQFDLTLARIVRVAGGHMTVAEAYRQLLRWGGRDYRRLTVEXFLRMLRNVKCTTVEFKDSEIPIVGLSPLNGGVFLRMVPAKTANHQALAKFNLLRQQFSSLG*

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