NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26437J51864_10009596

Scaffold JGI26437J51864_10009596


Overview

Basic Information
Taxon OID3300003910 Open in IMG/M
Scaffold IDJGI26437J51864_10009596 Open in IMG/M
Source Dataset NameFreshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2123
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location NameUniversity of Notre Dame, Indiana, USA
CoordinatesLat. (o)41.7Long. (o)-86.23Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060610Metagenome132Y
F079784Metagenome115N

Sequences

Protein IDFamilyRBSSequence
JGI26437J51864_100095964F060610N/AMDEGRDSTYTTIDEGCVVGLGCKVHTHHHTIHIEPQIVYQSMVKFTIFGKQYCTNQWGQTYELPTDEPIPEPTLMQQTYASDTITPTTSAFLLAPKPEAKIIIKPRTEYSDYKPTMDGPVMGTLLVFTIYITAHWAWNSMSAWNNLYSELSACLRSSS*
JGI26437J51864_100095965F079784N/AMAARRVNKPRQVLDIFIKYWRPTIGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKANDNG*

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