Scaffold JGI26437J51864_10001950

Overview

Basic Information

• Taxon OID: 3300003910
• Scaffold ID: JGI26437J51864_10001950
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4723
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F065768	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26437J51864_100019501	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGIVEADTLYYVWLQHNATGKIQQFEATSDGEGYLNIEGIQIDPLQGYTIWVTDSAGSQEQLDITVDGDIYKCLSFSAVSVGLSPVVIP*
JGI26437J51864_100019507	F057894	N/A	MAANRWRSGYMRLQDDSFTGYLTPIGSVQDVEVTFKLKVMQQIMEASEDIQMEVPNEYLIGSLKQNDEGYYTADVIIYNKVVRLKLTEDEIKRSKTLSL*
JGI26437J51864_100019509	F059603	N/A	VTTEEKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHESFRMHLMNADPESIVYGYYLKRCAKWIRTLKLHNQKLIPIFVPNGTKD*