Scaffold JGI26667J51740_10222117

Overview

Basic Information

• Taxon OID: 3300003906
• Scaffold ID: JGI26667J51740_10222117
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BAHAMAS.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 557
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → Methanosarcina barkeri (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Bremen, Bremen, Germany
• Coordinates
  • Lat. (^o): 53.109679
  • Long. (^o): 8.847516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003746	Metagenome	470	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26667J51740_102221171	F003746	N/A	TPHTLSVTSTRLLVTSPDTHQLIQFDANGFELRRVQLPRVMEPQHAVESPTGTFIVSLHNAQLKQNQVAEVNTGGKVLRQFSGSRLTSLGVTPHVAVDSHGNVFVVDQTNRRILLLDNRLSLRRVIIDEHQLNYKPWRLCYREDKGQLLVGLLGGVAVFDVLCR*