Scaffold JGI26667J51740_10152828

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26667J51740_10152828

Scaffold JGI26667J51740_10152828

Overview

Basic Information
Taxon OID	3300003906 Open in IMG/M
Scaffold ID	JGI26667J51740_10152828 Open in IMG/M
Source Dataset Name	Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius vacuus BAHAMAS.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	648
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	Bremen, Bremen, Germany
Coordinates	Lat. (^o)	53.109679	Long. (^o)	8.847516	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034382	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26667J51740_101528281	F034382	N/A	QTDFHLFKRMQSLAMNTEIAFGLYGRHLEQILRHNSAGDRLIETKFGMFMLNLMPMTTHGSKLKQEIEFQYGDSPFSQTGSSFI*

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