NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26657J51804_10102527

Scaffold JGI26657J51804_10102527


Overview

Basic Information
Taxon OID3300003905 Open in IMG/M
Scaffold IDJGI26657J51804_10102527 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)799
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameMax Planck institute for Marine Microbiology, Germany
CoordinatesLat. (o)53.109679Long. (o)8.847516Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010010Metagenome309Y
F036543Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
JGI26657J51804_101025271F010010N/AMVFGVGQFNYASHIWLGHTLVAMATKICDFQHKIGYNSACAGDTPQIVAPTRGFSGSANLMVSVNLCSDDPCCHGNEKLGILPENLP*
JGI26657J51804_101025272F036543N/AMYNRSYGKFSGKIPNFSLPWQQGSSEQSLTDTIKLADPDNPLGARIWGVSPAQ

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