Scaffold JGI26658J51805_10020153

Overview

Basic Information

• Taxon OID: 3300003904
• Scaffold ID: JGI26658J51805_10020153
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius albidus HERON ISLAND.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 932
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 53.109679
  • Long. (^o): 8.847516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084807	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26658J51805_100201531	F084807	GGA	MANVGTDNALHIPPVAMYTALMAAEGEAFPVTQYRHIKACILHSMELRLSAIAP
JGI26658J51805_100201532	F084807	GGA	MTNVGTDNPLHIPPVAMSTALMTAEGEAFPVTQYRHIKACILHSMKSRLSAIAPKPEVISRMSL*
JGI26658J51805_100201533	F084807	GGA	MADVGTDTALHIPPVVLSTALMAAEAEAFPVTQYRHTCIKACILHSMELRLSAIAPKPEVNSRMSL*
JGI26658J51805_100201534	F084807	GGA	MTNVGTDNALHIPPVAMYTALMAAEGEAFPVTLYRHIKDCRLHSMKSRFSAIAPKPEVISRMSL*
JGI26658J51805_100201535	F084807	N/A	RDTALLIPLVAMAIALTDVEGEAFPVTQYRHIKACILHSMKSRISAIAPKPEVNSRMSL*