Scaffold Ga0063241_1027322

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1027322
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4332
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F085538	Metagenome / Metatranscriptome	111	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_10273225	F085538	N/A	LTSENIFKVGVGINYFDDTEGLIKILTNDTVYDYITKFYVIDGIYAGRKDKQESDPKYLKDLQNIYSKLHIVDMNNKTQIEKRNKYWELAKKDKMDYMSDSDEYIDINPNVFDSSLRTIQDRPEKCYPIKQHMVGITTMSRPRLFKAPFTFRHLQSEDTISHGSLYEKDGTEIIAQMYAWFKDHPKREVNSDNQSGVDGIQMWHDKEFRTKERVIADRVYYDNNPNR*
Ga0063241_10273226	F037175	N/A	MINFHTNDINERFVKSTVWNTLAHLKVYNIGRWLKKWDIHVWDLKDTNPQFFEHIKTTSGQKINPNMPSGVTGKFRMDLYLHDSRNVFKLRENSDRIQHEICHALLIGTPHFVSGVHDNIDNRFTVNYWYWDKFKYTKFTLSIIDIRKYL*
Ga0063241_10273227	F049294	AGCAG	MAGNLRYYGLGAYTGLVALWTGMGQIPLDQNTAIALLAPVAILIGADYAKHKSDKVE*
Ga0063241_10273228	F090244	N/A	MDVEARIFEKLDKIEDRLNDLCVRITSMENEYNSHIADMEKKQANKLRRRDYTLAIMAIGLTVIEVCRTLGVI*