Scaffold Ga0063241_1016558

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1016558
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4048
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F086311	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_10165581	F023365	N/A	MANLGEITEIVNASELTLEVGSDNYILLSDLSIHIGRTESRDVVTSGEPLYSYGSGDNYFTATLLVSTPELSSLNTLTQINGNGDMTSTAWKIVAKNVSGNTKTFAATGILRDYDVSKPSEGKVSIDIFVRITGDTISIT*
Ga0063241_10165582	F015345	N/A	LTTVDLFAIKQRVVEILKSDTTNLWDSTPSSRTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSQVAIVENNVNLGQEYDIRLKLLFVVEAKDGQKTEEDIDDFTKSIIEKLENNYDLRAVGGAESTRLAEASHVTQVIDLPTMFRGDRVKGRVLKFRVIVRT*
Ga0063241_10165583	F086311	N/A	MANGTEITIQSEDVGTIIKGTAKSRSGDTDTIIDLNDVTAITIYLRDPDGELSNHTATAVNVDGGTDGIWSFTTSSAIFSRNPGIWYIQAKYALAGGTVFYSNIKTLNVGETLL*