Scaffold Ga0063241_1015763

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1015763
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4177
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F021750	Metagenome / Metatranscriptome	217	Y
F037632	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_101576311	F000325	GGAG	MKTADGNAKLGTGCIVVSRPVGDTCPATCVYLDKDCYALQTERQYKNAREAGFANVITEIGKIRSMLIDAIKRGKSIRFHERGDWFLDGKLDEKYVDNVCVACESVIKSGYTLPDMWFYTHIYDSRLPAKLGKYMAVYASIHNPDDMQTAKSAGFKLFAWCDSDMAIAPKRPRGKIKKAAWQAALPKLVVLSGETFVTCPEIRKGRDFVTCTGNKNSRACNMCPTGKKNVLFPCH*
Ga0063241_101576312	F021750	GAGG	MKIYRYSYVTLEDFVDAHELDLYDVDDILLNSKYSYGTNDDTLVGYETLCDLCDTRPLSTYRGIDLMVSLGS*
Ga0063241_10157637	F037632	AGG	MTKIIVEFSGWVECDSDKVKFQYISNDDDQCTVITGTEWLKLSEDDRDDYILEDCIEAQKTSVDGSYEHLDVIIVDENNKEVTAIRTFS*