Scaffold Ga0063241_1010563

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1010563
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5383
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F062151	Metagenome / Metatranscriptome	131	Y
F072848	Metagenome / Metatranscriptome	121	Y
F093997	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_10105631	F093997	N/A	DRSGDKKPSSDKGGLKMQQKADDTELVEKSQHTFTTETPRPNAALETVEKSHVDSSQILEDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY*
Ga0063241_10105633	F001625	AGGTGG	MAVTISTSDWTDANVRKTLSWQAALTSKLRVYKVTVTAGGSDAYATNGVSADLKEGRISTLVAVIPEYTDSLYKVEYDKANEKIKLFSVGGSAGAVFAEVADSTSIANKVFEFLVIGY*
Ga0063241_10105634	F031648	N/A	MVEYNHNVKSFNADTTIKGNHGVIVSVYVSKTGSSGSKCVFKNGTTSSGTEEFTIFSEQQGSYVGINRRFEDGIFADITGNAEYTVVFK*
Ga0063241_10105637	F072848	AGG	MKMSNIINNDKINIGFDLIDEAMAKAVNEHHLNFYEILTILAMMDAKVKQNNISQYLIETVTRFQEQTNKEDQELR*
Ga0063241_10105638	F062151	AGGA	MTSTSYRSADLLESILVDNWTSDNVPNVQKAWERRSVGFIDDRRDQIILTPKAENIKYFGLYGNDHWHDVTIDLDIRTYQNDERHADIVSEVIRIIKSKIRGGDDYTDLRVMASYSRNQYMRNMFNHIITISMRIKETT*