Scaffold Ga0063241_1003481

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1003481
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19757
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F036977	Metagenome / Metatranscriptome	169	Y
F040142	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_100348118	F006550	GGTGG	MADVFNTKKADYKGMQLWLNPVDKTVYATERAPTYSFNEAGGYALYDFNKHFQNQKLAKDSFGEKSYMHDAFVDSEFKRIAEDYVSDVQAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYSRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGVWDTFVSGADRSTYSPLNDLGIAKLLIEGSGVGGKLDRVGMHPLDFAKYMSNTFIRGVASTKPAEVSFEPGTRELPGFPEAGLVLDNAIRQGDVYCVDVSKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAAVIQSETGRQLTGVSTPSDWT*
Ga0063241_100348124	F040142	N/A	MVDLGTSGQEVNAKEFAIFIGTESNEWVNLQNARVLISHPVFREPTTSGGVKTFTGAPDHNISGTVVFTRDQWDNGTSNDFKSLLDVTNGEVPTNSWIVKFVDVNGTSTGTTLTFTNCKVSVVDISKSVEGGVKADITIVCPDEPTSA*
Ga0063241_100348125	F036977	AGG	VGLDLTKQRLLSSRDRVIRYIDQHIMLWAIEEVLLPAKNDLQNSISAKAAEALSLEKTGLMKVDLKWDLRGENNEPIHFYLEFGTSPHTITPKGKMFGGADALHWKGPTGKDVFAKIVRHPGSKKHVGLIQTIKKERLPELQSRIISETQNKMEIDSI*