Scaffold Ga0063241_1003212

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1003212
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12360
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F051547	Metagenome	144	N
F053638	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_100321211	F016619	N/A	MAITIAQNSDHKSLTGKTLSVQSQLTSKLKECIVDITFGASDNYASDGNTVDLSMGGRIDTVIGCEILHCDKGLLLQYAPATGGAAASGKLKAYGHTPTSSTTTVIALEELDDGDTAVNSMSVRCRVIGF*
Ga0063241_100321213	F034394	N/A	MVTTTTYCSVEDIIDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREIHDLPLLYTFGWGTPIFLHHRNIRDLDADEGDKIEIWKGETNSWENILGQDQWYHMEYERGTLHLRGYLFTILRKNRVRITYRYGGENYAGDTDIPLDIADAVIKMTAIEIMNTSFRMDEIPSGGTVSPSESKRFWQEDIENCILNRREVFVIP*
Ga0063241_100321215	F042629	GGAG	LTVTTYDAVDDIINLIRTKWSSLRPPHITKVWEKRTVGFIDDRSDEIVLSPKGENISYFGLGGSAFWHEQIMELDIRTYQDIKRHNKVVKEVVKIIKENIVGTSYTDLRVIGSFSRNYQFRNMYSYIVTISYRKSNPS*
Ga0063241_100321217	F053638	N/A	MALIPIKITYNGKEEIVEFEDSLTFGETEALIGQSVDLSDVTKPKIDLQKYRMNLLVLTIKKAPFKTGDITTLKMTDSKIIKSILKEIVKVHPLTDYIEDWMETFISSEALSIQDTPSTTNVQPNSGGIKKKSTNSQ*
Ga0063241_10032123	F001235	AGG	LPTELDTNANANDLTKKLWEKHQSDEYTRVNNYKEAVCLSCLKVDGAIATVVDICGDCAGKKGREPLLAKVTDKYYGLCFFCNSYKFHIEQINGRFCNTCHGRIAKVTREYNEKGGFMKVDPFWIKMRKKHGKDWKQIMSSGLKSHRK*
Ga0063241_10032128	F051547	N/A	MIDPLLIATLSVIGGAILNTVRGFINSSETTYSMRKFLGAVIVAVFAGIAVAQTLNVVGVGLVELVLIGLTVGFSVDYAVSKAKKEIN*