Scaffold Ga0063241_1001443

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1001443
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22230
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (52.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046073	Metagenome / Metatranscriptome	152	Y
F098233	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_100144328	F046073	N/A	MALYTLATVKAILGETGSSNDTKIGHYGDMADRLIISDTMNVNGVPNPPAVTANVISAAEFADIQNFADQIAVGYFYKFESGDTLTIEEAKENWKNWFNNKFRRPQFKVRGGETVN*
Ga0063241_100144329	F098233	GAG	MRTKSRGNLRPVYELIYELAEPFGRECEVCLRKMKKPMSGFTIHHLVYRKGEKTHRDFSSRLKYYQFLKDILKKSTKKGTLHSDFAFLCNACHHSIDGPRGLKRRKKMNVLRLFLMYFRTNT*