Scaffold Ga0063241_1001343

Overview

Basic Information

• Taxon OID: 3300003894
• Scaffold ID: Ga0063241_1001343
• Source Dataset Name: Marine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Argonne National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21476
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (54.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location

• Location Name: northern Gulf of Mexico, LA
• Coordinates
  • Lat. (^o): 28.7167
  • Long. (^o): -90.8333
  • Depth (m): 16

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036977	Metagenome / Metatranscriptome	169	Y
F046073	Metagenome / Metatranscriptome	152	Y
F052263	Metagenome / Metatranscriptome	143	N
F056157	Metagenome / Metatranscriptome	138	N
F098233	Metagenome / Metatranscriptome	104	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063241_100134315	F052263	GAG	MTKSSSWAKHNMRENRNNQYRPEQLEIYKQLRAVNANSTILMEYSVEYVNEQDEKRVAIGDIVDITKKIFYRLNGKIHNSKKQEDKDWEQKVYLEKLGWKVVDIET*
Ga0063241_100134323	F098233	AGGAG	MRKTALKPVYEIIFELSKLFDSECFVCHKSMKKPKSGFTIHHLVYRDNEKNHKHFTSRLEYYIYLKPIILKYQKRGNLHSKFMFLCNACHHSIDGPRGLKRRKRENVLRLFLAYYSTNT*
Ga0063241_100134324	F046073	AGG	MVLFEFTKVKSVLGELGTTNDAKIKHYGEMADNALMGDLINVKDLPNPLAVTEDVLTQTELDDIKSFASQYTVGYFYKFESGDEMTIAEAKENWKNWFNSKFRRPTFKARGGEL*
Ga0063241_10013433	F056157	N/A	MAKKKLASEDYWAQQIIRAQSGGKDYIFALVRRKYSDDDIEPVGPGEYIGMTEKRSYPKITDNDPDSDTFGKRIDKPNSEPTGIKMEYQDEFTPENIKKYQTMSGITDFGETILIYKFKQMSIRADKVNEFWSISQDDAYNKYILKEQVIKIEEDKSNTRRRISKKAG*
Ga0063241_10013434	F106115	AGTAG	MAVATAASIQAHLIGGTYPEGTLNANNIFDYEQYTTRRRYPSCEVITTQPQSTIETKRSTDTIVGFEINYYDKNLGLRTDDVSTQREVENAIMTRMETMVLQDYKIVFESKTWSRQSVQRDGGHPAYLVSTLKITVKQVNVTEMPVDGVLKFIDVGSTVVDDQPSGDYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLRSNGEKPEIKFVYTNKTADEVAITNTFTAEPESVQMLYKTTDAVVFRLIAKLISDNIIT*
Ga0063241_10013436	F036977	N/A	MSFDLTKQRLQSAKYRIDTYIDQNIVLWATETVLLPGQTDIANNISQRAANALSLEKSGYMKVDLVWDFRNEEGAPIHFFLEYGTRPHEIRAKGRENGGADALHWTDRTSGESRYAKVVQHPGTQSRELISQIKEERMPDLRQRVIDETQRFMEISAI*