Scaffold Ga0031658_1007998

Overview

Basic Information

• Taxon OID: 3300003860
• Scaffold ID: Ga0031658_1007998
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1818
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0031658_10079985	F015354	N/A	MNPNVSSLIRHGLSALGGFLVAKGLASADQVAEIAGATVTLIGAVWSIWKNKTSAAKTE*
Ga0031658_10079986	F026825	N/A	MTDHHAFIRDISIGVGGPIIGIMGNAMFSDPNLKTASLALGAFAAFLTCVVKLVELYQKFKNRNK*
Ga0031658_10079987	F001272	N/A	MIKIELTTEQANTLLQLIDIAIKAGGFQNAKVGVPLAEIILEAAKQSQVPSAN*