Scaffold Ga0031658_1006195

Overview

Basic Information

• Taxon OID: 3300003860
• Scaffold ID: Ga0031658_1006195
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F100256	Metagenome	102	Y
F104453	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0031658_10061953	F100256	N/A	MADPGFHQAYWNAVRALPVITLEQPRQYFQRWRETYRCKVLGTEIVFDNDEDYTWFMLRWG*
Ga0031658_10061955	F040990	N/A	MNYYYEIDPGYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSKRVWLENANGVYMIKPVWDAKRLRVDPHEFTLVKLRAKTIKWWHDEQE*
Ga0031658_10061956	F104453	GGTGG	MSKNEYYANAAARLDTIIGGDTEKFVRLKKCKEEWDRLADAVPVGQGFLTFNDYVREYYGIKLGVDSYTGGVRLDYDIIDDKKYTVFLLKFGQ*
Ga0031658_10061957	F034448	N/A	MYVNNYTLPRPEDNVLAKCHQVMIADPAFRMWAMKKYCIENKLSLVWSELVETSDVSAYFDEVCVFYFIDPADATLFRLKFK*