Scaffold Ga0031658_1002725

Overview

Basic Information

• Taxon OID: 3300003860
• Scaffold ID: Ga0031658_1002725
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3187
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F028148	Metagenome	192	Y
F086618	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0031658_10027251	F086618	N/A	NNLINGNLSDARRSARGLTYSEIFNWLTYSVGWSENRSRACADYLKNRIDFQAYCNADR*
Ga0031658_10027252	F028148	N/A	MKTIHQIIREIQFFDPTVRAFDAHDLPQSVRAYLHHNYRMDARLTDDEQQLVEVSFEPFADNLREAFQDDPRPDATRFYLFDDSSLYVRTNAGPELWADAQVFVVERILPAMRLTRLEAELMREIGMDEQVSEVRSDFFGAFARVLNRDCGIPFHESRIHWDAYSRQLGNPAREDAELGGLESGTAEGNRFAADFLATPKTV*
Ga0031658_10027256	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGETEEHGATPMSIYDDDKHICSITAANGEQILELIIEREEGDRLMQIGEPETLQ*
Ga0031658_10027258	F001964	GGAGG	VSGRGNLFGPAKFKVQISGAIGWSDLKQRVVRFEMIEFASRKEAEKSAKELNPGEYTQGRIRVVPVDMPEDYDVYPVAEKTKTAG*