Scaffold Ga0031658_1000609

Overview

Basic Information

• Taxon OID: 3300003860
• Scaffold ID: Ga0031658_1000609
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6138
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031658_100060911	F049410	GGA	MTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWTIIN*
Ga0031658_100060916	F042157	N/A	MRYIYTHIQQKTTMNLKQKYRSPDNKQLKKIADYLIYVLLPFIQTSLALAESQGLISLKQAFWGGLAATFLLINTKFLTKFTTETPSRTDLINGDGC*
Ga0031658_10006096	F044325	N/A	MKQLIQKLLFGYRSNPAAYIPKGGAKLTHKGGNAEAIHSALVLMQYNIRNAKD*
Ga0031658_10006097	F062749	N/A	MKTKLSLFMWAVAVLFMSFWSVSFAMSGVYYDNSEFVTFTLSFCASLVSAVCGAGFMQQWMKK*
Ga0031658_10006098	F041191	N/A	MWSRVYAAMDEEMKLLYKPTNLTCEFIVPDIEKSDGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGERTIQRIGRYEIGELVKCELNWGSYIECKANDGYVFRVAPKCSFPIGYQLYSYAEKDGVEGVKVDINIEIMNLKIN*