Scaffold Ga0031655_10012673

Overview

Basic Information

• Taxon OID: 3300003852
• Scaffold ID: Ga0031655_10012673
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4255
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036080	Metagenome / Metatranscriptome	170	Y
F058556	Metagenome	135	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031655_100126733	F083731	AGG	MNLRQLLKQAGISNDIVKEVERKAKKTSEQMEQEHQEKALALTKMMINDALRYRKEHGPKKAAEEQLRTIVLPDEK*
Ga0031655_100126735	F036080	AGGA	MNPHIDLESAIMLAWQTSDDIDLLYKHHGDAPRPMTEDEVATALLGIKALXDMRMEKLMDTYCRKMELNQYCTDPVKLAARETTFPIKKXKNK*
Ga0031655_100126739	F058556	AGGAG	MSTFIVEHEYKGYPMFETITGVEDIDTSLFDKILTMWVCDTPEEIDAVESELRRKHARSGQ*