Scaffold Ga0031655_10000011

Overview

Basic Information

• Taxon OID: 3300003852
• Scaffold ID: Ga0031655_10000011
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111433
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 101 (86.32%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040026	Metagenome	162	Y
F050314	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031655_1000001156	F050314	AGG	MSDMTHLVRRDLHVAFDCPADWTVIDLDEQAGLRTSDPTDPRVALQVACDESASPLDEGSERLRNGLPVDALCEQGTLRRGRVDTDGRASPDGPPLKALAFRARDGSFVYRVLVAQDTGLHWTIRLETLQRKEWWQESRTLETMLASLLLL*
Ga0031655_1000001184	F040026	GGAGG	VAYSTNGSGFWWLQSAYLNVLEDEGVVSPETALTLDDINSLINPFVRFGAFGQGWLVVNKLSRYGVLRACPDDKYYLDQNAADQFRYSFARWLPW*