Scaffold Ga0058699_1010304

Overview

Basic Information

• Taxon OID: 3300003845
• Scaffold ID: Ga0058699_1010304
• Source Dataset Name: Agave microbial communities from Guanajuato, Mexico - At.P.e
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 647
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → Asparagales → Asparagaceae → Asparagoideae → Asparagus → Asparagus officinalis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location

• Location Name: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 20.6863
  • Long. (^o): -101.8747

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044772	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058699_10103041	F044772	N/A	DLYQAVRAVQYGIPPSSQNLFGILERYNPLTGTFFTPVGEMGLALHELHEVSGLATGDSPYEEYVPTTEELNLMKKGSPQVYETYWEVLCHFHICGQVTSWRSGGVKQLSWASYLFNGINKKDHPVTRLAPSSDKEIDDRVKASEGFYTTVSNEDGFEPDMVFESFHHQARIPVSDRALLAGFLMLWLKRCVVPTLPHEVIVADVVYPAVLLAYG