NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049117_10169495

Scaffold Ga0049117_10169495


Overview

Basic Information
Taxon OID3300003843 Open in IMG/M
Scaffold IDGa0049117_10169495 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius geniculatus HERON ISLAND.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)672
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006040Metagenome383Y
F011120Metagenome295N

Sequences

Protein IDFamilyRBSSequence
Ga0049117_101694951F011120GAGMAYKFAECKLGGLSRVVCNVGVYRKLKTKPKTIAEVKEFLQVIWSNLPQGPIDKTVKDFLN*
Ga0049117_101694952F006040N/AMKSGQLARSQFPALRAVCAGALSCWKINPVGSRRLLGKNDNLVTIYKQNKLLFVKALL*

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