NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0032355_1074710

Scaffold Ga0032355_1074710


Overview

Basic Information
Taxon OID3300003840 Open in IMG/M
Scaffold IDGa0032355_1074710 Open in IMG/M
Source Dataset NameAvena fatua rhizosphere microbial communities from Hopland, California, USA - H2_Bulk_Litter_50 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Source Dataset Sampling Location
Location NameHopland, California, USA
CoordinatesLat. (o)38.97364Long. (o)-123.117453Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021721Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0032355_10747101F021721N/APRFTARFSDPSACRRSLRGIPTRFSVRSLAIPAFQPGRVIVTGPHSPDSGIPEPETRYGLSLARNDACATIARSMFLTCSFASTPKTAADPFDPRLLRSVRFRGRTGAISTPGTRYPRRFPALPIHPRPPLPFRSLWNLPDRSVQPVPVSGNPPCLTLDCPSLPAASSFDSALAQRSRLASPCRAIVP

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