NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0051980_10170093

Scaffold Ga0051980_10170093


Overview

Basic Information
Taxon OID3300003830 Open in IMG/M
Scaffold IDGa0051980_10170093 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000449Metagenome / Metatranscriptome1126Y
F028080Metagenome192N

Sequences

Protein IDFamilyRBSSequence
Ga0051980_101700931F000449N/AMKNKKAGGEDTPSPDPDQEYELRTSAPQAEMERYYIRKKASLLRKIRKINKKIKKNIYNPYAGDDEKHKNAHE*
Ga0051980_101700932F028080N/AMQATMKNTKMPMSKGYNSEVLGREILKQINDIGHLKYKLKKDVNDIYSIVLSKPGSTFFFEGYKAELWKAAFDDFSKRWKEIDLKKYTVDCMVQHLYNVVMQEDEKRKGKIILNIK*

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