Scaffold Ga0051980_10109732

Overview

Basic Information

• Taxon OID: 3300003830
• Scaffold ID: Ga0051980_10109732
• Source Dataset Name: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000320	Metagenome / Metatranscriptome	1306	Y
F000449	Metagenome / Metatranscriptome	1126	Y
F002777	Metagenome	530	Y
F034815	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051980_101097321	F000320	N/A	MQATMKNTKMPQSKDYKSEALGREILRKINQIGEKTYKLKKDVNDVCGLILSKPGATMFVEGHKAELWKEASDDFSQQWKEIAAEKYEVECMVHLMYDLVLQSEIKRRGKIVLNIKRRAMSMVK*
Ga0051980_101097322	F000449	N/A	MKNKKAGEEDIPSPDLDQEYELRTSAPQEEMERYYARKKASLERKLRRINKKIKKNIYNPYAGDDEKYKNAPE*
Ga0051980_101097323	F002777	N/A	MENTKKNTGANXHISMNTEIMSGRIIQKIXEIGRKTYELKQKENAFYAEVKEKSRHTEIVGTDKLREMVYEKFGPEWKKIEDGKNEVNWMIYRLYISIEGEEENIKKK*
Ga0051980_101097325	F034815	N/A	CFGDEVYDQFAEEKWDTLAFRLRMMLRRDLQRIVCGEKKYEIHPI*