Scaffold Ga0051980_10065018

Overview

Basic Information

• Taxon OID: 3300003830
• Scaffold ID: Ga0051980_10065018
• Source Dataset Name: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2287
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002298	Metagenome / Metatranscriptome	573	Y
F063344	Metagenome	129	Y
F104465	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0051980_100650185	F002298	N/A	MKKAKASVGAVPTQEDKIKKGILNMTLKKIGNIREKSDEIDRINMEFYNLVGKTQGPQTIFEQHRTTIKIDVFRRDIGKRWAENMKKREEIYEIIDMLYELAKIETENNDAQRSKQMSWAEVRKKIQQNMVKTLSR*
Ga0051980_100650186	F104465	N/A	MKMVREKSDENEKMIKEYNARGERIYKNPINRENAKTEKIKQK*
Ga0051980_100650187	F063344	N/A	MKKITYFEFQNTKKYKISKKYXVVFFTIGRCAFFRYFEDDGLETCEVERSCVRHWLSRQETERLFNFEDEKKEEFKKYIF*