Scaffold Ga0051980_10023611

Overview

Basic Information

• Taxon OID: 3300003830
• Scaffold ID: Ga0051980_10023611
• Source Dataset Name: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4366
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000449	Metagenome / Metatranscriptome	1126	Y
F004273	Metagenome	445	Y
F004515	Metagenome	434	Y
F062440	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0051980_1002361110	F000449	N/A	KNKKAGEGISPSPDLDQEFELRTSAPQEEMERYYARKKASLLRKLRQINKKIKKNIYNPYAGDDEKH*
Ga0051980_100236112	F004515	AGGAG	MVQTVISRTLSAGGKIILLEKPYALSRIFFSIRALADQSTWYQSRLSFDDPLFHSYYVLDGPAKYFEARGEGIFQGDVWVLNASDQNLQYTATEILI*
Ga0051980_100236116	F004273	N/A	MKNNEKAIVLGAGAVLTYLFLQKKEEKKEKKVNMPNLSIFPTEFYA*
Ga0051980_100236119	F062440	N/A	MQATMKNTKTPPSKGTKVEALGRDILKKINNIGHLTYKLKRDVNDIYGIILSKPGIHISADGHKAELWAAAFDDFSHRWKDIQTKRYEVECLVNLMYDLVKQEDEKRLGKIVLNIK*