Scaffold Ga0056137_1004438

Overview

Basic Information

• Taxon OID: 3300003829
• Scaffold ID: Ga0056137_1004438
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type G CAVOLI
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2505
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012932	Metagenome	276	Y
F022774	Metagenome	213	Y
F040380	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056137_10044382	F012932	GGAG	MVWKVVIERVTVIKFRMDNGGGNGAGCFEVEIWADTAKFTNVIVAGFRKCRDLVREGKVFIKDKAKVASRVGCSERRVVNFRKLLFKSDKKKLSFRRVESKKVCSHPGRDLL*
Ga0056137_10044383	F022774	GAG	MLVTVGTRSAEHSLRSQVGMGSESDCLLGQLNRILEISDSEAGLKVEKSGGVIGEVGECGDADVELLARERRSLDILSVKKEARLSARALAEVEVGRGEEDLRCKSLFIVCQRRRGLSEEEETRLA*
Ga0056137_10044384	F040380	N/A	MVAVTKRFESRPIKSRVGAFPDVFGMMNGRFKGTESRSEPRVRFRLAAGKSGYYWCVFVK