Scaffold Ga0007872_1000232

Overview

Basic Information

• Taxon OID: 3300003826
• Scaffold ID: Ga0007872_1000232
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jul08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10870
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010516	Metagenome	302	Y
F021219	Metagenome	219	N
F070722	Metagenome	122	N
F071820	Metagenome	121	N
F091105	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007872_100023210	F010516	AGG	MNPYAVWVPSNTGRYLLTFATLDEAYLFIIRFGGGLEVVPNTYENF*
Ga0007872_100023211	F070722	N/A	MDNDLLKQALAHIGRIGGKSTSDKKRASSRLNAQKATEARLKRQKPVKGHRIAPNEHITD
Ga0007872_100023215	F071820	N/A	MSRQRSKATNWASLLQNEIKATEKKPVGKGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA*
Ga0007872_100023219	F021219	N/A	MLRDEMKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNKPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVLEQEIEELEWQRYLREKRGHDKYYEEAPV*
Ga0007872_100023221	F091105	AGGA	MIQQTGTLGHITAISPLGTSFESNYGTLYPHSIEFASGTKGTCNSKKPVSQYKPGDSVYFTVSEDKKTKANLIKILGTESYQAKAGIRAENYKQAEQIGFASASKPAYNPDGAALGNAKNIAKDIVIHNARVQNVILKPDELENGDFQEFVRIVLKTQ*