Scaffold Ga0007875

Basic Information
Taxon OID	3300003823 Open in IMG/M
Scaffold ID	Ga0007875_1000008 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003823 Open in IMG/M

Scaffold ID

Ga0007875_1000008 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32566
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32566

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y
F070810	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007875_100000817	F026795	AGGA	MAKNYKDFSYFETRPDIVKLFDDLEAFHDWCRTELCEFNEAHLYNRESWQWRNFDKTRRPKKPFTGERKPYLGKNPRYNNDRISN*
Ga0007875_100000822	F009462	N/A	MLWANIEHLKQLKEMKMQVEQLHESIKDTYKEIVIKEQEGFRLVLKKHEVLAPKGLFALDLEQQHLKDGEVVDSQTYNFFMTKEECQTLASGLTA*
Ga0007875_100000824	F026556	GGAGG	MTMTSALIKLTFGIAFIVIAVVFGPLVGIWSLNTLFPVLNIPFTWQTWLAFNVLFGGSLATRLKK*
Ga0007875_100000826	F070810	AGAAG	MDVTDILWEIKVPWQGQKEYWWNELCADIVEVFGLPGDRYTSHPHTNCMFFRFKSKKDYHLCKILLSDKIGM*
Ga0007875_100000829	F002977	AGGAG	MTDLRIQVPAEGIMQTNDWGKSKVYRVACECGASEHDHHVWVEADDHGEVSVTVYTTVRSNWWSKDRWHHIWTLLTKGYIDTESTLVMRKQQAFNYAHTLLSAVEDVEKFKEERDAERQTNN*
Ga0007875_100000843	F015338	AGG	MALKSGKPNPLNYFNLRRVEFACPHFKYTTISKFNPSLAKSLDSWIRQNLNNRYYIGQGLELDNTNTIVYNTTIGFESEKELSFFTIACPYL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007875_1000008

Overview

Ecosystem & Geography

Associated Families

Sequences