Scaffold Ga0056122_10016193

Overview

Basic Information

• Taxon OID: 3300003817
• Scaffold ID: Ga0056122_10016193
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius sp. 2 HERON ISLAND
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1325
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043665	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0056122_100161931	F043665	AGG	MGVTQLHDVVYIVCWRSSTILRFNAITHQRLTDINVKDLRDPWDIVACKRTQQLYVADDPACVRRVSADGADIKLWWSKSSSDTFEHWKLSVTSNRLLMTSHVTKQLLQLDSDRNELKRVQLPHYMRPFHAVESSSGSFVVSHDNIQLKQYQISEVNTAGEVLRQFSGSRLSSLGFTPHMAVDSDGNIFLADFDNHHILLLDAQLTLRGVIIDKHQLNYKPWRLCYREQTGQLLVGLVHDVAVFELRR*