Scaffold Ga0007856_1001944

Overview

Basic Information

• Taxon OID: 3300003815
• Scaffold ID: Ga0007856_1001944
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1987
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010516	Metagenome	302	Y
F070722	Metagenome	122	N
F071820	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007856_10019441	F071820	N/A	MSQQRSKATSWASLLQHEIKATEKKPVGKSWKTAKELQREFKVGERKLYDILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRTAV*
Ga0007856_10019444	F070722	N/A	MNDDLLKQALAQIGRKGGLSTSDKKRASSRLNAQKATEARLKRKKPVKGHRIAPNEHIMD
Ga0007856_10019445	F010516	N/A	MNQDPYAVWVPTNTGRYLLTFATLDEAYLYIIRFGGGLEVVPNTYENF*