Scaffold Ga0007856_1000399

Overview

Basic Information

• Taxon OID: 3300003815
• Scaffold ID: Ga0007856_1000399
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5077
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Magasanikbacteria → Candidatus Magasanikbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_16 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027088	Metagenome / Metatranscriptome	195	N
F042708	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007856_10003992	F027088	N/A	MKKLLILALLALPLVSKAQLVQSPEYSWRVQICDLTYNNNQQLTACPVTVFYQSTITNGGAFVSNVQSVPQTLSVDLVAQAASTVVYNGTTYTYGQALGIMNAIFAQERTAELANAAKASSVSAPQTTQNLSPVVTTNNTK*
Ga0007856_10003993	F042708	N/A	MNQHIQRHSVGYCLVVMALADAFAEQFKGVTHQQVASMNWLDWAVSFAEFIAAAGTVLAAYLQKYPSYETPSLPPSSPAK*