NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007856_1000399

Scaffold Ga0007856_1000399


Overview

Basic Information
Taxon OID3300003815 Open in IMG/M
Scaffold IDGa0007856_1000399 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5077
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Magasanikbacteria → Candidatus Magasanikbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_36_16(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027088Metagenome / Metatranscriptome195N
F042708Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0007856_10003992F027088N/AMKKLLILALLALPLVSKAQLVQSPEYSWRVQICDLTYNNNQQLTACPVTVFYQSTITNGGAFVSNVQSVPQTLSVDLVAQAASTVVYNGTTYTYGQALGIMNAIFAQERTAELANAAKASSVSAPQTTQNLSPVVTTNNTK*
Ga0007856_10003993F042708N/AMNQHIQRHSVGYCLVVMALADAFAEQFKGVTHQQVASMNWLDWAVSFAEFIAAAGTVLAAYLQKYPSYETPSLPPSSPAK*

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