NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007856_1000134

Scaffold Ga0007856_1000134


Overview

Basic Information
Taxon OID3300003815 Open in IMG/M
Scaffold IDGa0007856_1000134 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8073
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053029Metagenome141Y
F071904Metagenome121Y
F086508Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0007856_10001345F071904GGCGGMTVDYSRVAAFDVRNAIWQELQNAGLLDPQDYYADGFDYPLVPIIPSQQVPEFNNLLPGKPYITYDIIQKNFGVQWWVSEESMILQVISRNHQQILTIINFLTDLFRRYELSAGDINGYAKPVGSPFKFLYFRLESANPVQPFIDEGGFMSGDFSIIYTYTREVDEGISNSGRYI*
Ga0007856_10001348F053029AGGGGGLQTINTNSQEKIQLEVYNNGVLTQADSIPTLSIYDADNDGSPITGFSHLTANDEAPSGLYSFLLTPAITNINRVLEIRWTYTIGGVTVTQTDFYAVETPYSNVYETIDFLGFGSVPSDINYVDPKLIANAEKLARTIIEGYTGIKFYTYYGGQEIYGIGADTIHLTERMINLDKIYENEILVYDNTQDPAYNTFGYSTVISPTGYELRIWYPGWQDGWNNQMDPTILYSGRFRDGYLYRFVGQVGYKYVPEDIKLASMLLIQDILSNDYNWRNKYLHKVDLSEISFEMAKGAFNGTGNIAVDNILDQYRKANIVII*
Ga0007856_10001349F086508GAGGMSFTDLKITELRKAADSFGVDTTGVKTKQEIIALLEEEGITYQMFDKFNKVEREEIEVPEVEKKKREQKIMKTVNQVLVKMERSNHSYQTSGHEFTQDHPFVAMSETDAQRIFDTQEGFRLATPREAQEYYA*

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