Scaffold Ga0007856_1000063

Overview

Basic Information

• Taxon OID: 3300003815
• Scaffold ID: Ga0007856_1000063
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11612
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F009741	Metagenome / Metatranscriptome	313	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y
F035737	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007856_100006323	F035737	GGAG	MSKQEFVVNDSDWAHELEKGVEEYTDMLFEAVWESSDDEIIETKSGEPFCGCSQCFWREALFFLVPKLLKGYEEGKIELED*
Ga0007856_10000633	F019092	GGA	MSNVPLLGERKSENEPMFRLLYCLVCGTLEELPPYDGPVELDHLLAVACEVHVFPSGEPHKGKLFVLPLRVWASTESKREIIRQIKGGGSAGLAEFDDSFYDSRSTFMEGAMECYSKHNKPKEGCLDWHAKDRLLIPKTQKERKAEGMGSYLDAPGPKTYLCDFCPVAVGVAQRKRKLMGK*
Ga0007856_10000635	F005167	AGAAG	MAVNSSRSMNRSLDEGATDGKYRKARPNTEVIPGQGHEETMRNRESLHPFSGYGFITSEMPNKVNPGK*
Ga0007856_10000637	F025484	GGA	MFDGDGAETMELQAKKVMQNAMHYRGSAPCPTCGVIMNPVEFMYNQGKCLNCLSQAKASRIKGKMA*
Ga0007856_10000638	F009741	GGAG	MTQSFDGNYDYTKPWRAPIQPDQVAKKWSYNGPWSTNMERLTSQALMVATIPGADIQAMVRPPLPQIRLFPDRFGYGPSVQPGIEDVVSVDRNYHEPRVSWYSGSPAGYTGSSRNDLGTN