Scaffold Ga0007838_1000708

Overview

Basic Information

• Taxon OID: 3300003805
• Scaffold ID: Ga0007838_1000708
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3169
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nerrivikvirus → Nerrivikvirus srim2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F048063	Metagenome	148	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007838_10007083	F055384	N/A	MITKPTNTFLAAEFPTWIDLKVGTVMEVRKEGQTGYLVDHPIIEGDCVVQKWNCIEVRDEVECCVTV*
Ga0007838_10007084	F021232	N/A	MKMRDLKQTYIIFTASDTVYCTAESYDLANEIIEADGLIDAVIQQVNHITSIEEGNPVTISYENTSTYDCTSDDVNDVRHKDHY*
Ga0007838_10007088	F048063	AGGA	MSIILTCNVTGKTVKWSNQSIIDAKIKEYGSLEAFQKAYVSRGANKKPKVKSSLLKDGEVDLMKSILEEGVKLAPSLSTKHMSNEEYVKHYEAKVKALEEAGASASEIGWMKQRLERWRG