Scaffold Ga0007817

Basic Information
Taxon OID	3300003804 Open in IMG/M
Scaffold ID	Ga0007817_1000278 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003804 Open in IMG/M

Scaffold ID

Ga0007817_1000278 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4338
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4338

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032253	Metagenome / Metatranscriptome	180	N
F046332	Metagenome / Metatranscriptome	151	N
F048095	Metagenome / Metatranscriptome	148	N
F066725	Metagenome / Metatranscriptome	126	N
F091311	Metagenome / Metatranscriptome	107	N
F091313	Metagenome / Metatranscriptome	107	N
F091933	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007817_100027811	F032253	N/A	MSQATETMSNDPRVIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPIAEQAQAKTAEMILQYESALLQNETLGXEDLITPIRFDVDSSNPAIISPEIRXIXATSLXELQATLYMIDMADQIISMISQXDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR*
Ga0007817_10002782	F066725	N/A	MCTRGVTWFTNPEGGEFTPAQLWDLREDLTKHLIIVLGRLTVELGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCXCGFKNRRRKQL*
Ga0007817_10002783	F046332	N/A	MNQSAQVSSSGHNRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYPGDNLVWVEPMREIANAIVKLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ*
Ga0007817_10002784	F091313	GAG	MATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ*
Ga0007817_10002786	F091933	N/A	MERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNETALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI*
Ga0007817_10002787	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFVLKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE*
Ga0007817_10002788	F091311	N/A	MVNNKTTIKENREITEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKNRVKLMKTLKRLAREVFTLSLRSRKSWKKKLPRFLIANKHVPI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007817_1000278

Overview

Ecosystem & Geography

Associated Families

Sequences