Scaffold Ga0007817_1000257

Overview

Basic Information

• Taxon OID: 3300003804
• Scaffold ID: Ga0007817_1000257
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4576
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032254	Metagenome / Metatranscriptome	180	N
F040465	Metagenome / Metatranscriptome	161	N
F081269	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007817_10002572	F040465	N/A	MSDEEVDECAQWPEITEEELSYAQDIWNREPSPDEERLDDWLLVMEEIVGIIGYTYYSTFQLLESKNVNNNCLLEALRALYIFAMAEVNVAKRKRTSS*
Ga0007817_10002574	F032254	N/A	MCVRKVGYRVAEKRFVXIPRLPPPSDKDAMSKFVVXTLCSNRACRYRQDVPXVQSLAQCTRSCGNPSCFYQSCHVVLVLDPSPKLYRDVLDVYKG*
Ga0007817_10002575	F081269	N/A	MEALPVAVSGSLYKSALTMIKELKKLVIKLTREGVSCSPSVIQMFDETKRWFMERIRVHFADSQKRYLQWRWRAAEKMFLQFKDGKPLTSVAATSVVNVAASPTRRPRKRVKVAAAGPFQLDRHSRMNGPRPSSG*