Scaffold Ga0007817_1000253

Overview

Basic Information

• Taxon OID: 3300003804
• Scaffold ID: Ga0007817_1000253
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4601
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F016243	Metagenome / Metatranscriptome	248	N
F022147	Metagenome / Metatranscriptome	215	N
F022593	Metagenome / Metatranscriptome	213	N
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N
F055419	Metagenome / Metatranscriptome	138	N
F073465	Metagenome / Metatranscriptome	120	N
F100356	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007817_10002531	F039941	N/A	MDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIQLKRSIMENMSLLIQLDLALNEAEILYENLIECRVLHACYRQQSS*
Ga0007817_100025310	F011134	N/A	MSTFAKSEENYDSKETLVDTIKTDLVNQFKMCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRIEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK*
Ga0007817_100025311	F100356	AGTAG	MEYRTLKNEIELLESVQRLMNEVNTELDFNDNYMTMLELFSTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN*
Ga0007817_100025314	F055419	N/A	ELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNVQQ*
Ga0007817_10002532	F037570	AGTAGG	MNIKRLDLLKIRNLKFRASQRQSVIDRLLRKKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQTVINGY*
Ga0007817_10002533	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRXQKSKDIVTLEKVSIANKLLIXTLSEEXRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQET*
Ga0007817_10002534	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKLQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCENE*
Ga0007817_10002535	F022593	N/A	MNRQEELKFFRDKVEQIRRYKLANYLAKRDIADILLMEDLEAESRRSLAHNHELLGRIDLLLGILEGIGELIIEFKEQEAI*
Ga0007817_10002538	F073465	N/A	MSNWRYRWRRPRPRYRPAPPAPRIEAVPIRSIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPLVSDV*