Scaffold Ga0007849_1002620

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007849_1002620

Scaffold Ga0007849_1002620

Overview

Basic Information
Taxon OID	3300003803 Open in IMG/M
Scaffold ID	Ga0007849_1002620 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1105
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069626	Metagenome	123	Y
F070862	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007849_10026203	F069626	GGA	MIDRLIADDITTIKAGLEEGDAEYLYNILMNGIGYDKQTLREIIDEYNSRTWEQS*
Ga0007849_10026205	F070862	AGGAG	MTKYFVVFTEESTKDYGYYVEAESKEDAYMQAEEKYYSLEDPDSLNTSYIKTLGYEVEEA

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