Scaffold Ga0007840_1000001

Overview

Basic Information

• Taxon OID: 3300003802
• Scaffold ID: Ga0007840_1000001
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Oct07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27375
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (22.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007840_100000111	F030662	N/A	MRLKDRNGPIPQGLWYEYSDDKGNRYRVNGMEMTYGRLFSQKVASDMTINNVAVPDNLDYLIEQQICGRIPSQYCWQEAGDKVANVIHSFASLGDRVAQSLGVNSNLEQTAKGCTACQKRRQALNQVLG*
Ga0007840_100000112	F048735	N/A	MEYNGFSLEQPKDTNYGIPNLIHVPQMFRELTAYRLTRGEFGRRERIKNGIKLEQSGLLNPAQHMINAFQLIYGNDVLLHSQGIPNNYAIDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRTAMRNIQAQYGANQSIGNLVEYRRMIVFETIDTKDTERDYTNAIKALAFPKGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWDAVTRYTKKWKTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTVQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDINWEPVWSNRTRVVCGFDPAFTAGGNRCAATFCRFGPNDTGRNLGFYLGTREYTSSVGDVFEESIAMQLVKDCLEYGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTERKISNLDKRTCKEAYDRLVTEYWFAVHTALSTRSLVGIDVEKHSQVVNELCSRLYYHKGRKVAVEKKLDMKHRLKKSPDLADSLTYAVQMLRRAGLEFSFEEESESLDIQEISDWENRLIHSKNNTQEKLEDDEWGYGGKGCDEDGF*
Ga0007840_10000015	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVAEDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLGNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEVIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLAVDWVYNASLPTFNVNDPTTWPRLVRVLPYIPVTTELGCKYVQNPAYNNADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSRLIIPAPCTLSPSYAPQYTPDCYACSSTVSQPI*