Scaffold Ga0007846_1005779

Overview

Basic Information

• Taxon OID: 3300003797
• Scaffold ID: Ga0007846_1005779
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1373
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F075668	Metagenome / Metatranscriptome	118	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007846_10057792	F075668	N/A	MSNKYSVNDVRCLVMYALNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLXEQNHSSFYNSXXXKSXRKINRLNQFYE*
Ga0007846_10057793	F104447	AGGA	MTSTKTGYLCTTIHQLRLKXEXXDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWRLTACAKYSWK*
Ga0007846_10057794	F029090	N/A	MKRKSKIVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFXQKANVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN*