Scaffold Ga0007846_1002401

Overview

Basic Information

• Taxon OID: 3300003797
• Scaffold ID: Ga0007846_1002401
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F074573	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007846_10024011	F074573	N/A	NNAILFLNPDVVQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVAVLAAITTGTPITTPRAASQVKRYLA*
Ga0007846_10024012	F000857	GGA	MELNLDNEEAKTNEDYYTKGNLEAGIEGILSRNNQMFNDVKSGTWSQTFKTDRIDYKIGAEDGRRYVQYTQHNVDAIKQNCKERREFYKIHGTANPFFAGTFHAMDLPKCFAHEISSKWFNNRPWELIKQDIDDKILFYAIVNEYYADFVCHPSGKIPLPYNPIIPTR*