NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007846_1000600

Scaffold Ga0007846_1000600


Overview

Basic Information
Taxon OID3300003797 Open in IMG/M
Scaffold IDGa0007846_1000600 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5535
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F027396Metagenome194Y
F029972Metagenome186Y
F052345Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0007846_100060011F029972AGGAMGLFQQKFSQRQERELEEQWPLAKRTVGSGNKWEKGDLSTQEQHMIEFVIEAKSTQAASFSITKKIWDTIKGHAQDRSWLARPILAIRLYGATEQPSTWGGTTSHTPDTLPVELDLICMDKDDFLELYYDYIRLKEKENE*
Ga0007846_10006003F052345AGGMDRRTREFKDLAKLTPTTQELLSEEIDGELYLYSSSPNCKICSTSDELKNIIDSLLLFPKTYREVLQAIEPIQDKLGIEGKERINYENIRNHQKKHLPFEKRLVREIVEKRAREKNRSILDAGDRLLTAEAFYEIIVAKGFEGIALGYDKPTLTQTMHAMDMLSKLEKEGQDDYRPEELVNQLDMILMAIREVLPDSMKEALFNRIEEYQNGTSKKAKKPRAIELEAEYIDEDLEDDL*
Ga0007846_10006005F027396AGAAGMTEPAPKRKSRKQEVIQGKITWQVLERLLNHYWEWYEIYLTSGNPDLKLNNGVTVNIYDILKGIDRLPPRQKQAVVLSCLENRKEVEVARIMGFTKWSSQVGMYKRKALKTLCETVWKSEND*
Ga0007846_10006006F021233AGGAMSFSKGINRGLEGLTEPELGVGHDDKFGELHEFAVRAFTWKTKPEDLAMLDTIERVVDEFMREYIDPAEVIIARFNTDKSMNDDEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKMETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRS*
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